Christine B. Peterson, PhD

Peer-Reviewed Articles

1. Ren Y, Peterson CB, Vannucci M. Bayesian network-guided sparse regression with flexible varying effects. Biometrics 80(4):None, 2024. PMID: 39377518.
2. Brooks FMD, Glenn MC, Hernandez V, Saez J, Pollard-Larkin JM, Peterson CB, Howell RM, Nelson CL, Clark CH, Kry SF. Is the IROC H&N credentialing phantom an effective surrogate for different anatomical sites?: Using IROC's H&N phantom for various sites. Int J Radiat Oncol Biol Phys None(None):None, 2024. PMID: 39362313.
3. Hayase E, Hayase T, Mukherjee A, Stinson SC, Jamal MA, Ortega MR, Sanchez CA, Ahmed SS, Karmouch JL, Chang CC, Flores II, McDaniel LK, Brown AN, El-Himri RK, Chapa VA, Tan L, Tran BQ, Xiao Y, Fan C, Pham D, Halsey TM, Jin Y, Tsai WB, Prasad R, Glover IK, Enkhbayar A, Mohammed A, Schmiester M, King KY, Britton RA, Reddy P, Wong MC, Ajami NJ, Wargo JA, Shelburne S, Okhuysen PC, Liu C, Fowler SW, Conner ME, Katsamakis Z, Smith N, Burgos da Silva M, Ponce DM, Peled JU, van den Brink MRM, Peterson CB, Rondon G, Molldrem JJ, Champlin RE, Shpall EJ, Lorenzi PL, Mehta RS, Martens EC, Alousi AM, Jenq RR. Bacteroides ovatus alleviates dysbiotic microbiota-induced graft-versus-host disease. Cell Host Microbe 32(9):1621-1636.e6, 2024. PMID: 39214085.
4. McCoy K, Marisetty S, Tan D, Jensen CT, Siewerdsen JH, Peterson CB, Ahmad M. Automatic vessel attenuation measurement for quality control of contrast-enhanced CT: Validation on the portal vein. Medical Physics 51(9):5954-5964, 2024. PMID: 39031758.
5. Leone, AO, Mohamed, AS, Fuller, C, Peterson, CB, Garden, AS, Lee, A, Mayo, LL, Moreno, AC, Reddy, JP, Hoffman, K, Niedzielski, JS, Court, LE, Whitaker, TJ. A visualization and radiation treatment plan quality scoring method for triage in a population-based context. Advances in Radiation Oncology 9(8):101533, 2024. PMID: 38993196.
6. Marquez B, Wooten ZT, Salazar RM, Peterson CB, Fuentes DT, Whitaker TJ, Jhingran A, Pollard-Larkin J, Prajapati S, Beadle B, Cardenas CE, Netherton TJ, Court LE. Analyzing the relationship between dose and geometric agreement metrics for auto-contouring in head and neck normal tissues. Diagnostics (Basel) 14(15):None, 2024. PMID: 39125508.
7. Ren Y, Osborne N, Peterson CB, DeMaster DM, Ewing-Cobbs L, Vannucci M. Bayesian varying-effects vector autoregressive models for inference of brain connectivity networks and covariate effects in pediatric traumatic brain injury. Human Brain Mapping 45(10):e26763, 2024. PMID: 38943369.
8. Glitza IC, Seo YD, Spencer CN, Wortman JR, Burton EM, Alayli FA, Loo CP, Gautam S, Damania A, Densmore J, Fairchild J, Cabanski CR, Wong MC, Peterson CB, Weiner B, Hicks N, Aunins J, McChalicher C, Walsh E, Tetzlaff MT, Hamid O, Ott PA, Boland GM, Sullivan RJ, Grossmann KF, Ajami NJ, LaVallee T, Henn MR, Tawbi HA, Wargo JA. Randomized placebo-controlled, biomarker-stratified phase Ib microbiome modulation in melanoma: impact of antibiotic preconditioning on microbiome and immunity. Cancer Discovery 14(7):1161-1175, 2024. PMID: 38588588.
9. Taylor PA, Mirandola A, Ciocca M, Hartzell S, Vai A, Alvarez P, Howell RM, Koay EJ, Peeler CR, Peterson CB, Kry SF. Technical note: Radiological clinical equivalence for phantom materials in carbon ion therapy. Medical Physics 51(7):5154-5158, 2024. PMID: 38598230.
10. Taylor, PA, Hartzell, S, Mirandola, A, Ciocca, M, Magro, G, Alvarez, PE, Peterson, CB, Peeler, CR, Koay, EJ, Howell, RM, Kry, SF. OSLD nanoDot characterization for carbon radiotherapy dosimetry. Physics in Medicine and Biology 69(11):115001, 2024. PMID: 38663410.
11. Mishra AK, Mahmud I, Lorenzi PL, Jenq RR, Wargo JA, Ajami NJ, Peterson CB. TARO: tree-aggregated factor regression for microbiome data integration. Bioinformatics 40(6):btae321, 2024. PMID: 38788190.
12. Jin, Y, Miyama, T, Brown, AN, Hayase, T, Song, X, Singh, A, Huang, L, Flores, I, McDaniel, LK, Glover, I, Halsey, T, Prasad, R, Chapa, V, Ahmed, SS, Zhang, J, Rai, K, Peterson, CB, Lizee, GA, Karmouch, J, Hayase, E, Molldrem, JJ, Chang, C, Tsai, W, Jenq, RR. Tsyn-seq: a T cell synapse–based antigen identification platform. Cancer Immunology Research 12(5):530-543, 2024. PMID: 38363296.
13. Brooks, FD, Glenn, MC, Hernandez, V, Saez, J, Mehrens, H, Pollard-Larkin, JM, Howell, RM, Peterson, CB, Nelson, CL, Clark, CH, Kry, SF. A radiotherapy community data-driven approach to determine which complexity metrics best predict the impact of atypical TPS beam modeling on clinical dose calculation accuracy. Journal of Applied Clinical Medical Physics 25(5):e14318, 2024. PMID: 38427776.
14. Peterson CB, Saha S, Do KA. Analysis of microbiome data. Annual Review of Statistics and Its Application 11(1):483-504, 2024. PMID: 38962089.
15. Manzano, JM, Sahar, H, Aldrich, J, Lu, M, Shoukier, M, Peterson, CB, Dickson, KB, Koom-Dadzie, K, Kheder, E, Franco Vega, M, Mohammed, AD, Muthu, M, Simbaqueba Clavijo, CA, Senechalle, MS, Brito-Dellan, N. Treatment patterns and outcomes of high-grade immune checkpoint inhibitor-related pneumonitis in an oncology hospitalist service. Supportive Care in Cancer 32(3), 2024. PMID: 38366007.
16. Murphy, BR, Dailey Garnes, NM, Hwang, H, Peterson, CB, Garey, K, Okhuysen, PC. Increased prevalence of Clostridioides difficile infection among pediatric oncology patients. Pediatric Infectious Disease Journal 43(2):136-141, 2024. PMID: 38134390.
17. Court, LE, Aggarwal, A, Jhingran, A, Naidoo, K, Netherton, T, Olanrewaju, A, Peterson, CB, Parkes, J, Simonds, H, Trauernicht, C, Zhang, L, Beadle, BM. Artificial intelligence-based radiotherapy contouring and planning to improve global access to cancer care. JCO Global Oncology 10, 2024. PMID: 38484191.
18. He, Y, Cazoulat, G, Wu, CC, Svensson, S, Almodovar-Abreu, L, Rigaud, B, McCollum, E, Peterson, CB, Wooten, Z, Rhee, DJ, Balter, PA, Pollard-Larkin, JM, Cardenas, CE, Court, LE, Liao, Z, Mohan, R, Brock, K. Quantifying the effect of 4-dimensional computed tomography–based deformable dose accumulation on representing radiation damage for patients with locally advanced non-small cell lung cancer treated with standard-fractionated intensity-modulated radiation therapy. International Journal of Radiation Oncology Biology Physics 118(1):231-241, 2024. PMID: 37552151.
19. Zhang, L, San Valentin, ED, John, TM, Jenq, RR, Do, K, Hanna, EY, Peterson, CB, Reyes-Gibby, CC. Influence of oral microbiome on longitudinal patterns of oral mucositis severity in patients with squamous cell carcinoma of the head and neck. Cancer 130(1):150-161, 2024. e-Pub 2023. PMID: 37688396.
20. Shi Y, Zhang L, Do KA, Jenq RR, Peterson CB. survivalContour: visualizing predicted survival via colored contour plots. Bioinformatics Advances 4(1):vbae105, 2024. PMID: 39086987.
21. Fahrmann, JF, Wasylishen, A, Pieterman, CR, Irajizad, E, Vykoukal, JV, Wu, R, Dennison, JB, Peterson, CB, Zhao, H, Do, K, Halperin, DM, Agarwal, SK, Blau, J, Jha, S, Rivero, JD, Nilubol, N, Walter, MF, Welch, JM, Weinstein, LS, Vriens, MR, Van Leeuwaarde, RS, Van Treijen, MJ, Valk, GD, Perrier, ND, Hanash, S, Katayama, H. Blood-based proteomic signatures associated with MEN1-related duodenopancreatic neuroendocrine tumor progression. The Journal of Clinical Endocrinology and Metabolism 108(12):3260-3271, 2023. PMID: 37307230.
22. Taiji, R, Cortes, A, Zaske, AM, Williams, ML, Dupuis, CJ, Tanaka, T, Nishiofuku, H, Chintalapani, G, Peterson, CB, Avritscher, R. Liver cancer vascularity driven by extracellular matrix stiffness. Investigative Radiology 58(12):894-902, 2023. PMID: 37403975.
23. Thompson, PA, Bazinet, A, Wierda, WG, Tam, CS, O'Brien, S, Saha, S, Peterson, CB, Plunkett, W, Keating, M. Sustained remissions in CLL after frontline FCR treatment with very-long-term follow-up. Blood 142(21):1784-1788, 2023. PMID: 37595283.
24. Swisher, EM, Rayes, N, Bowen, D, Peterson, CB, Norquist, BM, Coffin, T, Gavin, K, Polinsky, D, Crase, J, Bakkum-Gamez, JN, Blank, S, Munsell, M, Nebgen, D, Fleming, GF, Olopade, OI, Law, S, Zhou, A, Levine, DA, D'Andrea, AD, Lu, KH. Remotely delivered cancer genetic testing in the Making Genetic Testing Accessible (MAGENTA) trial. JAMA Oncology 9(11):1547-1555, 2023. PMID: 37707822.
25. Gronberg, M, Jhingran, A, Netherton, T, Gay, SS, Cardenas, CE, Chung, CV, Fuentes, DA, Fuller, CD, Howell, RM, Khan, M, Lim, TY, Marquez, B, Olanrewaju, A, Peterson, CB, Vazquez, I, Whitaker, TJ, Wooten, ZT, Yang, M, Court, LE. Deep learning–based dose prediction to improve the plan quality of volumetric modulated arc therapy for gynecologic cancers. Medical Physics 50(11):6639-6648, 2023. PMID: 37706560.
26. Witt, RG, Cass, SH, Tran, T, Damania, A, Nelson, EE, Sirmans, E, Burton, EM, Chelvanambi, M, Johnson, S, Tawbi, H, Gershenwald, JE, Davies, MA, Spencer, C, Mishra, A, Wong, MC, Ajami, NJ, Peterson, CB, Daniel-MacDougall, CR, Wargo, J, McQuade, JL, Nelson, KC. Gut microbiome in patients with early-stage and late-stage melanoma. JAMA Dermatology 159(10):1076-1084, 2023. PMID: 37647056.
27. Chien KS, Peterson CB, Young E, Chihara D, Manasanch EE, Ramdial J, Thompson PA. Outcomes of breakthrough COVID-19 infections in patients with hematologic malignancies. Blood Advances 7(19):5691-5697, 2023. PMID: 36696472.
28. Liu, X, Zhang, YT, McGrail, DJ, Zhang, X, Lam, TA, Hoang, A, Hasanov, E, Manyam, GC, Peterson, CB, Zhu, H, Kumar, SV, Akbani, R, Pilie, PG, Tannir, NM, Peng, G, Jonasch, E. SETD2 loss and ATR inhibition synergize to promote cGAS signaling and immunotherapy response in renal cell carcinoma. Clinical Cancer Research 29(19):4002-4015, 2023. PMID: 37527013.
29. Button, JE, Cosetta, CM, Reens, AL, Brooker, SL, Rowan-Nash, AD, Lavin, RC, Saur, R, Zheng, S, Autran, CA, Lee, ML, Sun, AK, Alousi, AM, Peterson, CB, Koh, AY, Rechtman, DJ, Jenq, RR, McKenzie, GJ. Precision modulation of dysbiotic adult microbiomes with a human-milk-derived synbiotic reshapes gut microbial composition and metabolites. Cell Host and Microbe 31(9):1523-1538.e10, 2023. PMID: 37657443.
30. Ahmad, M, Sun, P, Peterson, CB, Anderson, M, Liu, X, Morani, A, Jensen, CT. Low pitch significantly reduces helical artifacts in abdominal CT. European Journal of Radiology 166, 2023. PMID: 37481832.
31. Thompson, PA, Keating, M, Ferrajoli, A, Jain, N, Peterson, CB, Garg, N, Wang, SA, Jorgensen, JL, Kadia, TM, Bose, P, Pemmaraju, N, Short, NJ, Wierda, WG. Venetoclax consolidation in high-risk CLL treated with ibrutinib for ≥1 year achieves a high rate of undetectable MRD. Leukemia 37(7):1444-1453, 2023. PMID: 37138019.
32. Gordon, MJ, Jones, JE, George, B, Peterson, CB, Burger, JA, Jain, N, Keating, M, Wierda, WG, Durand, J, Ferrajoli, A. Long-term outcomes in patients with chronic lymphocytic leukemia treated with ibrutinib. Cancer 129(14):2192-2200, 2023. PMID: 37016930.
33. Steenbeek, MP, Van Bommel, MH, Inthout, J, Peterson, CB, Simons, M, Roes, KC, Kets, M, Norquist, BM, Swisher, EM, Hermens, RP, Lu, KH, De Hullu, JA. TUBectomy with delayed oophorectomy as an alternative to risk-reducing salpingo-oophorectomy in high-risk women to assess the safety of prevention. International Journal of Gynecological Cancer 33(6):982-987, 2023. PMID: 37045546.
34. Mehrens H, Molineu A, Hernandez N, Court L, Howell R, Jaffray D, Peterson CB, Pollard-Larkin J, Kry SF. Characterizing the interplay of treatment parameters and complexity and their impact on performance on an IROC IMRT phantom using machine learning. Radiotherapy and Oncology 182:109577, 2023. e-Pub 2023. PMID: 36841341.
35. Gronberg MP, Beadle BM, Garden AS, Skinner H, Gay S, Netherton T, Cao W, Cardenas CE, Chung C, Fuentes DT, Fuller CD, Howell RM, Jhingran A, Lim TY, Marquez B, Mumme R, Olanrewaju AM, Peterson CB, Vazquez I, Whitaker TJ, Wooten Z, Yang M, Court LE. Deep learning-based dose prediction for automated, individualized quality assurance of head and neck radiation therapy plans. Practical Radiation Oncology 13(3):e282-e291, 2023. e-Pub 2023. PMID: 36697347.
36. Shoemaker, K, Ger, R, Court, LE, Aerts, HJ, Vannucci, M, Peterson, CB. Bayesian feature selection for radiomics using reliability metrics. Frontiers in Genetics 14(1112914), 2023. PMID: 36968604.
37. Zhou, Y, Medik, YB, Patel, B, Zamler, D, Chen, S, Chapman, T, Schneider, S, Park, EM, Babcock, R, Chrisikos, TT, Kahn, LS, Dyevoich, AM, Pineda, JE, Wong, MC, Mishra, A, Cass, SH, Cogdill, AP, Johnson, DH, Johnson, S, Wani, K, Ledesma, D, Hudgens, CW, Wang, JJ, Khan, MA, Peterson, CB, Joon, A, Peng, W, Li, H, Arora, R, Tang, X, Raso, G, Zhang, X, Foo, WC, Tetzlaff, M, Diehl, G, Dwyer, KC, Whitley, EM, Gubin, M, Allison, JP, Hwu, P, Ajami, NJ, Diab, A, Wargo, J, Watowich, SS. Intestinal toxicity to CTLA-4 blockade driven by IL-6 and myeloid infiltration. Journal of Experimental Medicine 220(2), 2023. PMID: 36367776.
38. Shi Y, Zhang L, Do K, Jenq RR, Peterson CB. Sparse tree-based clustering of microbiome data to characterize microbiome heterogeneity in pancreatic cancer. Journal of the Royal Statistical Society Series C: Applied Statistics 72(1):20-36, 2023. PMID: 37034187.
39. Francisco DMA, Zhang L, Jiang Y, Olvera A, Adachi J, Guevara EY, Aitken SL, Garey KW, Peterson CB, Do KA, Dillon R, Obi EN, Jenq R, Okhuysen PC. Risk factors associated with severe Clostridioides difficile infection in patients with cancer. Infectious Diseases and Therapy 12(1):209-225, 2023. PMID: 36443547.
40. Francisco-Cruz A, Rocha P, Reuben A, Krishnan SN, Das P, Chen R, Quek K, Li J, Parra ER, Solis LM, Barua S, Jiang M, Lazcano R, Chow CW, Behrens C, Gumb C, Little L, Fukuoka J, Kalhor N, Weissferdt A, Kadara H, Heymach JV, Swisher S, Sepesi B, Rao A, Moran C, Zhang J, Lee JJ, Fujimoto J, Futreal PA, Wistuba II, Peterson CB, Zhang J. Analysis of immune intratumor heterogeneity highlights immunoregulatory and coinhibitory lymphocytes as hallmarks of recurrence in stage I non-small cell lung cancer. Mod Pathol 36(1), 2023. PMID: 36788067.
41. Wooten ZT, Yu C, Court LE, Peterson CB. Predictive modeling using shape statistics for interpretable and robust quality assurance of automated contours in radiation treatment planning. Pacific Symposium on Biocomputing 2023 28(None):395-406, 2023. PMID: 36540994.
42. Das, P, Peterson, CB, Ni, Y, Reuben, A, Zhang, J, Zhang, J, Do, K, Baladandayuthapani, V. Bayesian hierarchical quantile regression with application to characterizing the immune architecture of lung cancer. Biometrics 79(3):2474-2488, 2023. PMID: 36239535.
43. de Miguel-Perez, D, Russo, A, Arrieta, O, Ak, M, Barrón, F, Gunasekaran, M, Mamindla, P, Lara-Mejia, L, Peterson, CB, Er, ME, Peddagangireddy, V, Buemi, F, Cooper, B, Manca, P, Lapidus, RG, Hsia, RC, Cardona, AF, Naing, A, Kaushal, S, Hirsch, F, Mack, PC, Serrano, MJ, Adamo, V, Colen, R, Rolfo, C. Extracellular vesicle PD-L1 dynamics predict durable response to immune-checkpoint inhibitors and survival in patients with non-small cell lung cancer. Journal of Experimental and Clinical Cancer Research 41(1), 2022. PMID: 35650597.
44. Mendoza, TR, Hong, DS, Peterson, CB, Stephen, B, Ileana Dumbrava, EE, Pant, S, Tsimberidou, AM, Yap, TA, Sheshadri, A, Altan, M, George, GC, Castillo, L, Rodriguez, E, Gong, J, Subbiah, V, Janku, F, Fu, S, Piha-Paul, SA, Rodon Ahnert, J, Karp, DD, Cleeland, C, Meric-Bernstam, F, Naing, A. Patient-reported symptom burden in patients with rare cancers receiving pembrolizumab in a phase II clinical trial. Scientific Reports 12(1), 2022. PMID: 35999229.
45. Schwabkey, Z, Wiesnoski, DH, Chang, C, Tsai, W, Pham, D, Ahmed, SS, Hayase, T, Ortega Turrubiates, MR, El-Himri, RK, Sanchez, CA, Hayase, E, Frenk Oquendo, AC, Miyama, T, Halsey, T, Heckel, BE, Brown, AN, Jin, Y, Raybaud, M, Prasad, R, Flores, I, McDaniel, L, Chapa, V, Lorenzi, PL, Warmoes, MO, Tan, L, Swennes, AG, Fowler, S, Conner, ME, McHugh, K, Graf, T, Jensen, VB, Peterson, CB, Do, K, Zhang, L, Shi, Y, Wang, Y, Galloway-Pena, J, Okhuysen, PC, Daniel-MacDougall, CR, Shono, Y, Burgos da Silva, M, Peled, JU, Van Den Brink, MR, Ajami, NJ, Wargo, J, Reddy, P, Valdivia, RH, Davey, L, Rondon, G, Srour, S, Mehta, RS, Alousi, AM, Shpall, E, Champlin, RE, Shelburne, S, Molldrem, JJ, Jamal, M, Karmouch, J, Jenq, RR. Diet-derived metabolites and mucus link the gut microbiome to fever after cytotoxic cancer treatment. Science translational medicine 14(671):eabo3445, 2022. PMID: 36383683.
46. McCulloch, MM, Cazoulat, G, Svensson, S, Gryshkevych, S, Rigaud, B, Anderson, BM, Kirimli, E, De, BS, Mathew, R, Zaid, M, Elganainy, D, Peterson, CB, Balter, PA, Koay, EJ, Brock, K. Leveraging deep learning-based segmentation and contours-driven deformable registration for dose accumulation in abdominal structures. Frontiers in Oncology 12:1015608, 2022. PMID: 36408172.
47. Qi, X, Zhou, S, Wang, Y, Peterson, CB. Bayesian sparse modeling to identify high-risk subgroups in meta-analysis of safety data. Research Synthesis Methods 13(6):807-820, 2022. PMID: 36054779.
48. Owens, CA, Rigaud, B, Ludmir, EB, Gupta, AC, Shrestha, S, Paulino, AC, Smith, SA, Peterson, CB, Kry, SF, Lee, C, Henderson, TO, Armstrong, GT, Brock, K, Howell, RM. Development and validation of a population-based anatomical colorectal model for radiation dosimetry in late effects studies of survivors of childhood cancer. Radiotherapy and Oncology 176:118-126, 2022. PMID: 36063983.
49. Netherton, T, Nguyen, C, Cardenas, CE, Chung, C, Klopp, AH, Colbert, LE, Rhee, DJ, Peterson, CB, Howell, RM, Balter, PA, Court, LE. An automated treatment planning framework for spinal radiation therapy and vertebral-level second check. International Journal of Radiation Oncology Biology Physics 114(3):516-528, 2022. PMID: 35787928.
50. Das, P, De, D, Maiti, R, Jomaa, M, Hutcheson, KA, Fuller, C, Chakraborty, B, Peterson, CB. Estimating the optimal linear combination of predictors using spherically constrained optimization. BMC Bioinformatics 23(3):436, 2022. PMID: 36261805.
51. Coffin, T, Bowen, D, Swisher, EM, Lu, KH, Rayes, N, Norquist, BM, Blank, S, Levine, DA, Bakkum-Gamez, JN, Fleming, GF, Olopade, OI, D’Andrea, AD, Nebgen, D, Peterson, CB, Munsell, M, Gavin, K, Lechner, R, Crase, J, Polinsky, D, Romero, IL. An accessible communication system for population-based genetic testing: development and usability study. JMIR Formative Research 6(10):e34055, 2022. PMID: 36251350.
52. Barbon CE, Peterson CB, Moreno AC, Lai SY, Reddy JP, Sahli A, Martino R, Johnson FM, Fuller CD, Hutcheson KA. Adhering to eat and exercise status during radiotherapy for oropharyngeal cancer for prevention and mitigation of radiotherapy-associated dysphagia. JAMA Otolaryngology–Head & Neck Surgery 148(10):956-964, 2022. PMID: 36074459.
53. Coffin, T, Bowen, D, Lu, KH, Swisher, EM, Rayes, N, Norquist, BM, Blank, S, Levine, DA, Bakkum-Gamez, JN, Fleming, GF, Olopade, OI, Romero, IL, D'Andrea, A, Nebgen, D, Peterson, CB, Munsell, M, Gavin, K, Crase, J, Polinsky, D, Lechner, R. Using social media to facilitate communication about women’s testing. JMIR Formative Research 6(9):e35035, 2022. PMID: 36155347.
54. Barbon, CE, Yao, CM, Peterson, CB, Moreno, AC, Goepfert, RP, Johnson, FM, Chronowski, G, Fuller, C, Gross, N, Hutcheson, KA. Swallowing after primary TORS and unilateral or bilateral radiation for low- to intermediate-risk tonsil cancer. Otolaryngology - Head and Neck Surgery 167(3):484-493, 2022. PMID: 34784256.
55. Thompson, PA, Jiang, XL, Banerjee, PP, Basar, R, Garg, N, Chen, K, Kaplan, M, Nandivada, V, Cortes, AN, Ferrajoli, A, Keating, M, Peterson, CB, Andreeff, M, Rezvani, K, Wierda, WG. A phase two study of high dose blinatumomab in Richter’s syndrome. Leukemia 36(9):2228-2232, 2022. PMID: 35941212.
56. Franklin, S, Aitken, SL, Shi, Y, Sahasrabhojane, P, Robinson, S, Peterson, CB, Daver, N, Ajami, NJ, Kontoyiannis, DP, Shelburne, S, Galloway-Pena, J. Oral and stool microbiome coalescence and its association with antibiotic exposure in acute leukemia patients. Frontiers in Cellular and Infection Microbiology 12, 2022. PMID: 35433514.
57. Vassiliev, ON, Peterson, CB, Chang, JY, Mohan, R. Monte Carlo evaluation of target dose coverage in lung stereotactic body radiation therapy with flattening filter-free beams. Journal of Radiotherapy in Practice 21(1):81-87, 2022. PMID: 35401050.
58. Shi Y, Zhang L, Peterson CB, Do KA, Jenq RR. Performance determinants of unsupervised clustering methods for microbiome data. Microbiome 10(1):25, 2022. PMID: 35120564.
59. Osborne, N, Peterson, CB, Vannucci, M. Latent network estimation and variable selection for compositional data via variational EM. Journal of Computational and Graphical Statistics 31(1):163-175, 2022. PMID: 36776345.
60. Schmiester, M, Maier, R, Riedel, R, Durek, P, Frentsch, M, Kolling, S, Mashreghi, MF, Jenq, RR, Zhang, L, Peterson, CB, Bullinger, L, Chang, HD, Na, IK. Flow cytometry can reliably capture gut microbial composition in healthy adults as well as dysbiosis dynamics in patients with aggressive B-cell non-Hodgkin lymphoma. Gut Microbes 14(1):e2081475, 2022. PMID: 35634713.
61. Glenn, MC, Brooks, FE, Peterson, CB, Howell, RM, Followill, DS, Pollard-Larkin, JM, Kry, SF. Photon beam modeling variations predict errors in IMRT dosimetry audits. Radiotherapy and Oncology 166:8-14, 2022. PMID: 34748857.
62. Vassiliev, ON, Peterson, CB, Chang, JY, Mohan, R. Using FFF beams to improve the therapeutic ratio of lung SBRT. Journal of Radiotherapy in Practice 20(4):419-425, 2021. PMID: 35330584.
63. Spencer, C, McQuade, JL, Gopalakrishnan, V, McCulloch, JA, Vétizou, M, Cogdill, AP, Wadud Khan, MA, Zhang, X, White, MG, Peterson, CB, Wong, MC, Morad, G, Rodgers, TE, Badger, JH, Helmink, BA, Andrews, MC, Rodrigues, RR, Morgun, A, Kim, YS, Roszik, J, Hoffman, KL, Zheng, JL, Zhou, Y, Medik, YB, Kahn, LS, Johnson, S, Hudgens, CW, Wani, K, Gaudreau, PO, Harris, AL, Jamal, M, Baruch, EN, Perez-Guijarro, E, Day, CP, Merlino, G, Pazdrak, B, Lochmann, BS, Szczepaniak Sloane, RA, Arora, R, Anderson, JE, Zobniw, C, Posada, E, Sirmans, E, Simon, JM, Haydu, LE, Burton, EM, Wang, L, Dang, M, Dwyer, KC, Schneider, S, Chapman, T, Anang, NA, Duncan, S, Toker, J, Malke, J, Glitza, IC, Amaria, RN, Tawbi, H, Diab, A, Wong, MK, Patel, SP, Woodman, SE, Davies, MA, Ross, MI, Gershenwald, JE, Lee, JE, Hwu, P, Jensen, VB, Samuels, Y, Straussman, R, Ajami, NJ, Nelson, KC, Nezi, L, Petrosino, JF, Futreal, A, Lazar, A, Hu, J, Jenq, RR, Tetzlaff, M, Yan, Y, Garrett, WS, Huttenhower, C, Sharma, P, Watowich, SS, Allison, JP, Cohen, L, Trinchieri, G, Daniel-MacDougall, CR, Wargo, J. Dietary fiber and probiotics influence the gut microbiome and melanoma immunotherapy response. Science 374(6575):1632-1640, 2021. PMID: 34941392.
64. Fahrmann JF, Wasylishen AR, Pieterman CRC, Irajizad E, Vykoukal J, Murage E, Wu R, Dennison JB, Krishna H, Peterson CB, Lozano G, Zhao H, Do KA, Halperin DM, Agarwal SK, Blau JE, Del Rivero J, Nilubol N, Walter MF, Welch JM, Weinstein LS, Vriens MR, van Leeuwaarde RS, van Treijen MJC, Valk GD, Perrier ND, Hanash SM. A blood-based polyamine signature associated with MEN1 duodenopancreatic neuroendocrine tumor progression. The Journal of Clinical Endocrinology & Metabolism 106(12):e4969–e4980, 2021. PMID: 34318891.
65. McGrail DJ, Pilié PG, Dai H, Lam TNA, Liang Y, Voorwerk L, Kok M, Zhang XH, Rosen JM, Heimberger AB, Peterson CB, Jonasch E, Lin SY. Replication stress response defects are associated with response to immune checkpoint blockade in nonhypermutated cancers. Science Translational Medicine 13(617):eabe6201, 2021. e-Pub 2021. PMID: 34705519.
66. Lim B, Peterson CB, Davis A, Cho E, Pearson T, Liu H, Hwang M, Ueno NT, Lee J. ONC201 and an MEK Inhibitor Trametinib Synergistically Inhibit the Growth of Triple-Negative Breast Cancer Cells. Biomedicines 9(10):1410, 2021. e-Pub 2021. PMID: 34680527.
67. Zhang, L, Shi, Y, Jenq, RR, Do, K, Peterson, CB. Bayesian compositional regression with structured priors for microbiome feature selection. Biometrics 77(3):824-838, 2021. PMID: 32686846.
68. Bogomolov, M, Peterson, CB, Benjamini, Y, Sabatti, C. Hypotheses on a tree: new error rates and testing strategies. Biometrika 108(3):575-590, 2021. PMID: 36825068.
69. He Y, Cazoulat G, Wu C, Peterson CB, McCulloch M, Anderson B, Pollard-Larkin J, Balter P, Liao Z, Mohan R, Brock K. Geometric and dosimetric accuracy of deformable image registration between average-intensity images for 4DCT-based adaptive radiotherapy for non-small cell lung cancer. Journal of Applied Clinical Medical Physics 22(8):156-167, 2021. PMID: 34310827.
70. Hartzell S, Guan F, Taylor P, Peterson CB, Taddei P, Kry S. Uncertainty in tissue equivalent proportional counter assessments of microdosimetry and RBE estimates in carbon radiotherapy. Physics in Medicine & Biology 66(15):155018, 2021. e-Pub 2021. PMID: 34252894.
71. Olanrewaju A, Court LE, Zhang L, Naidoo K, Burger H, Dalvie S, Wetter J, Parkes J, Trauernicht CJ, McCarroll RE, Cardenas C, Peterson CB, Benson KRK, du Toit M, van Reenen R, Beadle BM. Clinical acceptability of automated radiation treatment planning for head and neck cancer using the radiation planning assistant. Practical Radiation Oncology 11(3):177-184, 2021. e-Pub 2021. PMID: 33640315.
72. Colen RR, Rolfo C, Ak M, Ayoub M, Ahmed S, Elshafeey N, Mamindla P, Zinn PO, Ng C, Vikram R, Bakas S, Peterson CB, Rodon Ahnert J, Subbiah V, Karp DD, Stephen B, Hajjar J, Naing A. Radiomics analysis for predicting pembrolizumab response in patients with advanced rare cancers. Journal for Immunotherapy of Cancer 9(4):e001752, 2021. PMID: 33849924.
73. Rigaud B, Anderson BM, Yu ZH, Gobeli M, Cazoulat G, Söderberg J, Samuelsson E, Lidberg D, Ward C, Taku N, Cardenas C, Rhee DJ, Venkatesan AM, Peterson CB, Court L, Svensson S, Löfman F, Klopp AH, Brock KK. Automatic segmentation using deep learning to enable online dose optimization during adaptive radiation therapy of cervical cancer. Int J Radiat Oncol Biol Phys 109(4):1096-1110, 2021. e-Pub 2020. PMID: 33181248.
74. Zhang L, Shi Y, Do KA, Peterson CB, Jenq RR. ProgPerm: Progressive permutation for a dynamic representation of the robustness of microbiome discoveries. BMC Bioinformatics 22(1):126, 2021. e-Pub 2021. PMID: 33731016.
75. Hajjar J, Mendoza T, Zhang L, Fu S, Piha-Paul SA, Hong DS, Janku F, Karp DD, Ballhausen A, Gong J, Zarifa A, Peterson CB, Meric-Bernstam F, Jenq R, Naing A. Associations between the gut microbiome and fatigue in cancer patients. Scientific Reports 11(1):5847, 2021. e-Pub 2021. PMID: 33712647.
76. Ha, MJ, Kim, J, Galloway-Pena, J, Do, K, Peterson, CB. Compositional zero-inflated network estimation for microbiome data. BMC Bioinformatics 21:1-20, 2020. PMID: 33371887.
77. Netherton, T, Rhee, DJ, Cardenas, CE, Chung, C, Klopp, AH, Peterson, CB, Howell, RM, Balter, PA, Court, LE. Evaluation of a multiview architecture for automatic vertebral labeling of palliative radiotherapy simulation CT images. Medical Physics 47(11):5592-5608, 2020. PMID: 33459402.
78. Bradley SD, Talukder AH, Lai I, Davis R, Alvarez H, Tiriac H, Zhang M, Chiu Y, Melendez B, Jackson KR, Katailiha A, Sonnemann HM, Li F, Kang Y, Qiao N, Pan BF, Lorenzi PL, Hurd M, Mittendorf EA, Peterson CB, Javle M, Bristow C, Kim M, Tuveson DA, Hawke D, Kopetz S, Wolff RA, Hwu P, Maitra A, Roszik J, Yee C, Lizée G. Vestigial-like 1 is a shared targetable cancer-placenta antigen expressed by pancreatic and basal-like breast cancers. Nature Communications 11(1):5332, 2020. e-Pub 2020. PMID: 33087697.
79. Glenn, MC, Peterson, CB, Howell, RM, Followill, DS, Pollard-Larkin, JM, Kry, SF. Sensitivity of IROC phantom performance to radiotherapy treatment planning system beam modeling parameters based on community-driven data. Medical Physics 47(10):5250-5259, 2020. PMID: 32677052.
80. Mendoza T, Sheshadri A, Altan M, Hess K, George G, Stephen B, Castillo L, Rodriguez E, Gong J, Peterson CB, Rodon Ahnert J, Fu S, Piha-Paul SA, Pant S, Dumbrava E, Yap TA, Janku F, Tsimberidou AM, Subbiah V, Karp DD, Zarifa A, McQuinn LM, Cleeland C, Hong DS, Naing A. Evaluating the psychometric properties of the Immunotherapy module of the MD Anderson Symptom Inventory. Journal for Immunotherapy of Cancer 8(2):e000931, 2020. PMID: 33097611.
81. Edward SS, Glenn M, Peterson CB, Balter PA, Pollard-Larkin JM, Howell RM, Followill D, Kry SF. Dose calculation errors as a component of failing IROC lung and spine phantom irradiations. Medical Physics 47(9):4502-4508, 2020. e-Pub 2020. PMID: 32452027.
82. Vykoukal J, Fahrmann JF, Gregg JR, Tang Z, Basourakos S, Irajizad E, Park S, Yang G, Creighton CJ, Fleury A, Mayo J, Paulucci-Holthauzen A, Dennison JB, Murage E, Peterson CB, Davis JW, Kim J, Hanash S, Thompson TC. Caveolin-1-mediated sphingolipid oncometabolism underlies a metabolic vulnerability of prostate cancer. Nature Communications 11(1):4279, 2020. e-Pub 2020. PMID: 32855410.
83. McCulloch M, Cazoulat G, Ford A, Elgohari BA, Bahig H, Kim AD, Elhalawani HM, He R, Wang J, Ding Y, Mohamed ASR, Polan DF, King J, Peterson CB, Ohrt AN, Fuller CD, Lai SY, Brock KK. Biomechanical modeling of radiation dose-induced volumetric changes of the parotid glands for deformable image registration. Phys Med Biol 65(16):165017, 2020. PMID: 32320955.
84. Vassiliev ON, Peterson CB, Grosshans DR, Mohan R. A simple model for calculating relative biological effectiveness of X-rays and gamma radiation in cell survival. British Journal of Radiology 93(1112):20190949, 2020. e-Pub 2020. PMID: 32464080.
85. Galloway-Pena, J, Shi, Y, Peterson, CB, Sahasrabhojane, P, Gopalakrishnan, V, Brumlow, C, Daver, N, Alfayez, M, Boddu, P, Khan, MA, Wargo, J, Do, K, Jenq, RR, Kontoyiannis, DP, Shelburne, S. Gut microbiome signatures are predictive of infectious risk following induction therapy for acute myeloid leukemia. Clinical Infectious Diseases 71(1):63-71, 2020. PMID: 31436833.
86. Shaddox E, Peterson CB, Stingo FC, Hanania NA, Cruickshank-Quinn C, Kechris K, Bowler R, Vannucci M. Bayesian inference of networks across multiple sample groups and data types. Biostatistics 21(3):561-576, 2020. PMID: 30590505.
87. Fahrmann JF, Vykoukal J, Fleury A, Tripathi S, Dennison JB, Murage E, Wang P, Yu CY, Capello M, Creighton CJ, Do KA, Long JP, Irajizad E, Peterson CB, Katayama H, Disis ML, Arun B, Hanash S. Association between plasma diacetylspermine and tumor spermine synthase with outcome in triple negative breast cancer. Journal of the National Cancer Institute 112(6):607-616, 2020. PMID: 31503278.
88. Tinoco, M, Waga, E, Tran, K, Vo, H, Baker, JS, Hunter, R, Peterson, CB, Taku, N, Court, LE. RapidPlan development of VMAT plans for cervical cancer patients in low- and middle-income countries. Medical Dosimetry 45(2):172-178, 2020. PMID: 31740042.
89. Wu X, Park M, Sarbassova DA, Ying H, Lee MG, Bhattacharya R, Ellis L, Peterson CB, Hung MC, Lin HK, Bersimbaev RI, Song MS, Sarbassov DD. A chirality-dependent action of vitamin C in suppressing Kirsten rat sarcoma mutant tumor growth by the oxidative combination: Rationale for cancer therapeutics. International Journal of Cancer 146(10):2822-2828, 2020. e-Pub 2019. PMID: 31472018.
90. Liu XD, Kong W, Peterson CB, McGrail DJ, Hoang A, Zhang X, Lam T, Pilie PG, Zhu H, Beckermann KE, Haake SM, Isgandrova S, Martinez-Moczygemba M, Sahni N, Tannir NM, Lin SY, Rathmell WK, Jonasch E. PBRM1 loss defines a nonimmunogenic tumor phenotype associated with checkpoint inhibitor resistance in renal carcinoma. Nature Communications 11(1):1-14, 2020. e-Pub 2020. PMID: 32358509.
91. Rigaud, B, Cazoulat, G, Vedam, S, Venkatesan, AM, Peterson, CB, Taku, N, Klopp, AH, Brock, K. Modeling complex deformations of the sigmoid colon between external beam radiation therapy and brachytherapy images of cervical cancer. International Journal of Radiation Oncology Biology Physics 106(5):1084-1094, 2020. PMID: 32029345.
92. Robinson, S, Peterson, CB, Sahasrabhojane, P, Ajami, NJ, Shelburne, S, Kontoyiannis, DP, Galloway-Pena, J. Observational cohort study of oral mycobiome and interkingdom interactions over the course of induction therapy for leukemia. mSphere 5(2), 2020. PMID: 32295867.
93. Chari NS, Ivan C, Le X, Li J, Mijiti A, Patel AA, Osman AA, Peterson CB, Williams MD, Pickering CR, Caulin C, Myers JN, Calin GA, Lai SY. Disruption of TP63-miR-27a* feedback loop by mutant TP53 in head and neck cancer. Journal of the National Cancer Institute 112(3):266-277, 2020. PMID: 31124563.
94. Das P, Peterson CB, Do KA, Akbani R, Baladandayuthapani V. NExUS: Bayesian simultaneous network estimation across unequal sample sizes. Bioinformatics 36(3):798-804, 2020. PMID: 31504175.
95. Peterson CB, Osborne N, Stingo FC, Bourgeat P, Doecke JD, Vannucci M. Bayesian modeling of multiple structural connectivity networks during the progression of Alzheimer's disease. Biometrics 76(4):1120-1132, 2020. PMID: 32026459.
96. Chen CC, Shen TY, Peterson CB, Hung GU, Pan T. Comparison of ejection fraction calculation between CT and SPECT at high heart rate - a dynamic cardiac phantom study. Journal of Nuclear Cardiology 28(1):311-316, 2020. e-Pub 2020. PMID: 31907855.
97. Shi Y, Zhang L, Do KA, Peterson CB, Jenq R. aPCoA: covariate adjusted principal coordinates analysis. Bioinformatics 36(13):4099-4101, 2020. PMID: 32339223.
98. Branco D, Kry S, Taylor P, Rong J, Zhang X, Peterson CB, Frank S, Followill D. Development of a stereoscopic CT metal artifact management algorithm using gantry angle tilts for head and neck patients. J Appl Clin Med Phys 21(8):120-130, 2020. PMID: 32506820.
99. Meier, J, Erasmus, JJ, Gladish, G, Peterson, CB, Diab, RH, Mawlawi, O. Characterization of continuous bed motion effects on patient breathing and respiratory motion correction in PET/CT imaging. Journal of applied clinical medical physics 21(1):158-165, 2020. PMID: 31816183.
100. Edward SS, Alvarez PE, Taylor PA, Molineu HA, Peterson CB, Followill DS, Kry SF. Differences in the patterns of failure between IROC lung and spine phantom irradiations. Practical Radiation Oncology 10(5):372-381, 2020. PMID: 32413413.
101. Glenn, MC, Peterson, CB, Followill, DS, Howell, RM, Pollard-Larkin, JM, Kry, SF. Reference dataset of users’ photon beam modeling parameters for the Eclipse, Pinnacle, and RayStation treatment planning systems. Medical physics 47(1):282-288, 2020. PMID: 31667870.
102. Reyes-Gibby CC, Wang J, Zhang L, Peterson CB, Do KA, Jenq RR, Shelburne S, Shah DP, Chambers MS, Hanna EY, Yeung SJ, Shete S. Oral microbiome and onset of oral mucositis in patients with squamous cell carcinoma of the head and neck. Cancer 126(23):5124-5136, 2020. PMID: 32888342.
103. Cremaschi, A, Argiento, R, Shoemaker, K, Peterson, CB, Vannucci, M. Hierarchical normalized completely random measures for robust graphical modeling. Bayesian Analysis 14(4):1271-1301, 2019. PMID: 32431780.
104. Vassiliev, ON, Peterson, CB, Cao, W, Grosshans, DR, Mohan, R. Systematic microdosimetric data for protons of therapeutic energies calculated with Geant4-DNA. Physics in Medicine and Biology 64(21):215018, 2019. PMID: 31553958.
105. Rhee, DJ, Cardenas, CE, Elhalawani, H, McCarroll, RE, Zhang, L, Yang, J, Garden, AS, Peterson, CB, Beadle, BM, Court, LE. Automatic detection of contouring errors using convolutional neural networks. Medical physics 46(11):5086-5097, 2019. PMID: 31505046.
106. McCulloch, MM, Anderson, BM, Cazoulat, G, Peterson, CB, Mohamed, AS, Volpe, S, Elhalawani, H, Bahig, H, Rigaud, B, King, JB, Ford, AC, Fuller, C, Brock, K. Biomechanical modeling of neck flexion for deformable alignment of the salivary glands in head and neck cancer images. Physics in Medicine and Biology 64(17):175018, 2019. PMID: 31269475.
107. Riquelme Sanchez, EM, Zhang, Y, Zhang, L, Montiel, MF, Zoltan, M, Dong, W, Quesada, PR, Sahin, I, Chandra, V, San Lucas, FA, Scheet, PA, Xu, H, Hanash, S, Feng, L, Burks, JK, Do, K, Peterson, CB, Nejman, D, Tzeng, CD, Kim, M, Sears, CL, Ajami, NJ, Petrosino, JF, Wood, LD, Maitra, A, Straussman, R, Katz, MH, White, JR, Jenq, RR, Wargo, J, McAllister, F. Tumor microbiome diversity and composition influence pancreatic cancer outcomes. Cell 178(4):795-806.e12, 2019. PMID: 31398337.
108. Kry, SF, Glenn, MC, Peterson, CB, Branco, D, Mehrens, H, Steinmann, A, Followill, DS. Independent recalculation outperforms traditional measurement-based IMRT QA methods in detecting unacceptable plans. Medical Physics 46(8):3700-3708, 2019. PMID: 31152568.
109. Rayes, N, Bowen, D, Coffin, T, Nebgen, D, Peterson, CB, Munsell, M, Gavin, K, Lechner, R, Crase, J, Polinsky, D, Romero, IL, Blank, S, Levine, DA, Norquist, BM, Swisher, EM, Lu, KH. MAGENTA (Making Genetic testing accessible): A prospective randomized controlled trial comparing online genetic education and telephone genetic counseling for hereditary cancer genetic testing. BMC Cancer 19(648), 2019. PMID: 31266460.
110. Galloway-Pena, J, Peterson, CB, Malik, FA, Sahasrabhojane, P, Shah, DJ, Brumlow, C, Carlin, LG, Chemaly, RF, Im, JS, Rondon, G, Felix, E, Veillon, L, Lorenzi, PL, Alousi, AM, Jenq, RR, Kontoyiannis, DP, Shpall, E, Shelburne, S, Okhuysen, PC. Fecal microbiome, metabolites, and stem cell transplant outcomes: A single-center pilot study. Open Forum Infectious Diseases 6(5), 2019. PMID: 31065565.
111. Kim J, Do KA, Ha MJ, Peterson CB. Bayesian inference of hub nodes across multiple networks. Biometrics 75(1):172-182, 2019. PMID: 30051914.
112. Strati, P, Takahashi, K, Peterson, CB, Keating, M, Thompson, PA, Daver, N, Jain, N, Burger, JA, Estrov, Z, O'Brien, S, Kantarjian, HM, Wierda, WG, Futreal, A, Ferrajoli, A. Efficacy and predictors of response of lenalidomide and rituximab in patients with treatment-naive and relapsed CLL. Blood Advances 3(9):1533-1539, 2019. PMID: 31076409.
113. Thompson, PA, Srivastava, J, Peterson, CB, Strati, P, Jorgensen, JL, Hether, T, Keating, M, O'Brien, S, Ferrajoli, A, Burger, JA, Estrov, Z, Jain, N, Wierda, WG. Minimal residual disease undetectable by next-generation sequencing predicts improved outcome in CLL after chemoimmunotherapy. Blood 134(22):1951-1959, 2019. PMID: 31537528.
114. Rubinstein, A, Gay, SS, Peterson, CB, Kingsley, CV, Tailor, RC, Pollard-Larkin, JM, Melancon, AD, Followill, DS, Court, LE. Radiation-induced lung toxicity in mice irradiated in a strong magnetic field. PloS One 13(11):e0205803, 2018. PMID: 30444887.
115. Jiang, ZD, Jenq, RR, Ajami, NJ, Petrosino, JF, Alexander, AA, Ke, S, Iqbal, T, Dupont, A, Muldrew, K, Shi, Y, Peterson, CB, Do, K, DuPont, HL. Safety and preliminary efficacy of orally administered lyophilized fecal microbiota product compared with frozen product given by enema for recurrent Clostridium difficile infection. PloS one 13(11), 2018. PMID: 30388112.
116. Thompson, PA, Peterson, CB, Strati, P, Jorgensen, JL, Keating, M, O'Brien, S, Ferrajoli, A, Burger, JA, Estrov, Z, Jain, N, Kadia, TM, Borthakur, G, DiNardo, C, Daver, N, Jabbour, EJ, Wierda, WG. Serial minimal residual disease (MRD) monitoring during first-line FCR treatment for CLL may direct individualized therapeutic strategies. Leukemia 32(11):2388-2398, 2018. PMID: 29769624.
117. Owens, CA, Peterson, CB, Tang, C, Koay, EJ, Yu, W, Mackin, DS, Li, J, Salehpour, M, Fuentes, DA, Court, LE, Yang, J. Lung tumor segmentation methods: Impact on the uncertainty of radiomics features for non-small cell lung cancer. PloS One 13(10), 2018. PMID: 30286184.
118. Vassiliev ON, Kry SF, Wang HC, Peterson CB, Chang JY, Mohan R. Radiotherapy of lung cancers: FFF beams improve dose coverage at tumor periphery compromised by electronic disequilibrium. Physics in Medicine & Biology 63(19):195007, 2018. e-Pub 2018. PMID: 30189421.
119. Kry, SF, Peterson, CB, Howell, RM, Izewska, J, Lye, J, Clark, CH, Nakamura, M, Hurkmans, C, Alvarez, PE, Alves, A, Bokulic, T, Followill, DS, Kazantsev, P, Leif, JL, Molineu, HA, Palmer, J, Smith, SA, Taylor, PA, Wesolowska, P, Williams, I. Remote beam output audits. Physics and Imaging in Radiation Oncology 7:39-44, 2018. PMID: 31872085.
120. Court, LE, Kisling, K, McCarroll, RE, Zhang, L, Yang, J, Simonds, H, du Toit, M, Trauernicht, C, Burger, H, Parkes, J, Mejia, M, Bojador, M, Balter, PA, Branco, D, Steinmann, A, Baltz, G, Gay, SS, Anderson, BM, Cardenas, CE, Jhingran, A, Shaitelman, SF, Bogler, O, Schmeller, K, Followill, DS, Howell, RM, Nelson, CL, Peterson, CB, Beadle, BM. Radiation planning assistant - A streamlined, fully automated radiotherapy treatment planning system. Journal of Visualized Experiments 2018(134), 2018. PMID: 29708544.
121. Shaddox, E, Stingo, F, Peterson, CB, Jacobson, S, Cruickshank-Quinn, C, Kechris, KJ, Bowler, R, Vannucci, M. A Bayesian approach for learning gene networks underlying disease severity in COPD. Statistics in Biosciences 10(1):59-85, 2018. PMID: 33912251.
122. McCarroll, RE, Beadle, BM, Balter, PA, Burger, H, Cardenas, CE, Dalvie, S, Followill, DS, Kisling, K, Mejia, M, Naidoo, K, Nelson, CL, Peterson, CB, Vorster, K, Wetter, J, Zhang, L, Court, LE, Yang, J. Retrospective validation and clinical implementation of automated contouring of organs at risk in the head and neck. Journal of Global Oncology 2018(4):1-11, 2018. PMID: 30110221.
123. Jasinska AJ, Zelaya I, Service SK, Peterson CB, Cantor RM, et al. Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate. Nature Genetics 49(12):1714-1721, 2017. PMID: 29083405.
124. Yang, F, Wang, J, Pierce, BL, Chen, L, Aguet, F, Ardlie, K, Cummings, BB, Gelfand, ET, Getz, G, Hadley, K, Handsaker, RE, Huang, KH, Kashin, S, Karczewski, KJ, Lek, M, Li, X, MacArthur, DG, Nedzel, JL, Nguyen, DT, Noble, MS, Segrè, AV, Trowbridge, CA, Tukiainen, T, Abell, NS, Balliu, B, Barshir, R, Basha, O, Battle, A, Bogu, GK, Brown, AA, Brown, CD, Castel, SE, Chiang, C, Conrad, DF, Cox, NJ, Damani, FN, Davis, JR, Delaneau, O, Dermitzakis, ET, Engelhardt, BE, Eskin, E, Ferreira, PG, Frésard, L, Gamazon, ER, Garrido-Martín, D, Gewirtz, AD, Gliner, G, Gloudemans, MJ, Guigi, R, Peterson, CB. Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis. Genome research 27(11):1859-1871, 2017. PMID: 29021290.
125. Saha A, Kim Y, Gewirtz ADH, Jo B, Gao C, McDowell IC, GTEx Consortium [including Peterson CB], Engelhardt BE, Battle A. Co-expression networks reveal the tissue-specific regulation of transcription and splicing. Genome Research 27(11):1843-1858, 2017. PMID: 29021288.
126. GTEx Consortium [including Peterson CB]. Genetic effects on gene expression across human tissues. Nature 550(7675):204-213, 2017. PMID: 29022597.
127. Brzyski D, Peterson CB, Sobczyk P, Candes E, Bogdan M, Sabatti C. Controlling the rate of GWAS false discoveries. Genetics 205(1):61-75, 2017. PMID: 27784720.
128. Peterson CB, Bogomolov M, Benjamini Y, Sabatti C. TreeQTL: hierarchical error control for eQTL findings. Bioinformatics 32(16):2556-8, 2016. e-Pub 2016. PMID: 27153635.
129. Peterson CB, Service SK, Jasinska AJ, Gao F, Zelaya I, Teshiba TM, Bearden CE, Cantor RM, Reus VI, Macaya G, López-Jaramillo C, Bogomolov M, Benjamini Y, Eskin E, Coppola G, Freimer NB, Sabatti C. Characterization of expression quantitative trait loci in pedigrees from Colombia and Costa Rica ascertained for bipolar disorder. PLoS Genet 12(5):e1006046, 2016. e-Pub 2016. PMID: 27176483.
130. Peterson CB, Stingo FC, Vannucci M. Joint Bayesian variable and graph selection for regression models with network-structured predictors. Statistics in Medicine 35(7):1017-31, 2016. e-Pub 2015. PMID: 26514925.
131. Peterson CB, Bogomolov M, Benjamini Y, Sabatti C. Many phenotypes without many false discoveries: error controlling strategies for multitrait association studies: Error controlling strategies for multitrait association studies. Genetic Epidemiology 40(1):45-56, 2016. e-Pub 2015. PMID: 26626037.
132. Peterson CB, Stingo FC, Vannucci M. Bayesian inference of multiple Gaussian graphical models. Journal of the American Statistical Association 110(509):159-174, 2015. PMID: 26078481.
133. Rembach A, Stingo FC, Peterson CB, Vannucci M, Do K, Wilson WJ, Macaulay SL, Ryan TM, Martins RN, Ames D, Masters CL, Doecke JD, The AIBL Research Group. Bayesian graphical network analyses reveal complex biological interactions specific to Alzheimer's Disease. Journal of Alzheimer's Disease 10(4):P796-P797, 2015. PMID: 25613103.
134. Cowley AW, Moreno C, Jacob HJ, Peterson CB, Stingo FC, Ahn KW, Liu P, Vannucci M, Laud PW, Reddy P, Lazar J, Evans L, Yang C, Kurth T, Liang M. Characterization of biological pathways associated with a 1.37 Mbp genomic region protective of hypertension in Dahl S rats. Physiological Genomics 46(11):398-410, 2014. e-Pub 2014. PMID: 24714719.
135. Allen, GI, Peterson, CB, Vannucci, M, Maletić-Savatić, M. Regularized partial least squares with an application to NMR spectroscopy. Statistical Analysis and Data Mining 6(4):302-314, 2013. PMID: 24511361.
136. Swartz MD, Peterson CB, Lupo PJ, Wu X, Forman MR, Spitz MR, Hernandez LM, Vannucci M, Shete S. Investigating multiple candidate genes and nutrients in the folate metabolism pathway to detect genetic and nutritional risk factors for lung cancer. PLoS One 8(1):e53475, 2013. e-Pub 2013. PMID: 23372658.
137. Peterson, CB, Vannucci, M, Karakas, C, Choi, W, Ma, L, Maletić-Savatić, M. Inferring metabolic networks using the bayesian adaptive graphical lasso with informative priors. Statistics and its Interface 6(4):547-558, 2013. PMID: 24533172.

Invited Articles

1. Peterson CB, Stingo FC. Invited discussion of “On the prior and posterior distributions used in graphical modelling” by Marco Scutari. Bayesian Analysis 8(3):539-542, 2013. PMID: None.

Other Articles

1. Kisling, K, Ger, R, Netherton, T, Cardenas, CE, Owens, CA, Anderson, BM, Lee, JS, Rhee, DJ, Edward, SS, Gay, SS, He, Y, David, SD, Yang, J, Nitsch, PL, Balter, PA, Urbauer, D, Peterson, CB, Court, LE, Dube, S A snapshot of medical physics practice patterns. Journal of Applied Clinical Medical Physics 19(6):306-315, 2018. PMID: 30272385.

Book Chapters

1. Peterson CB, Stingo F. Bayesian estimation of single and multiple graphs. In: Handbook of Bayesian Variable Selection. None. Chapman and Hall/CRC, None, 2021.
2. Peterson CB, Swartz MD, Shete S, Vannucci M. Bayesian model averaging for genetic association studies. In: Advances in Statistical Bioinformatics: Models and Integrative Inference for High-Throughput Data. None. Cambridge University Press, 208-223, 2013.

Letters to the Editor

1. de Miguel-Perez, D, Ortega, FG, Tejada, RG, Martínez-Única, A, Peterson, CB, Russo, A, Gunasekaran, M, Cardona, AF, Amezcua, V, Lorente, JA, Expósito Hernández, J, Rolfo, C, Serrano, MJ. Baseline extracellular vesicle miRNA-30c and autophagic CTCs predict chemoradiotherapy resistance and outcomes in patients with lung cancer. Biomarker Research 11, 2023.