Muhammad Aminu, PHD

Peer-Reviewed Articles

1. Aminu M, Zhu B, Vokes N, Chen H, Hong L, Li J, Fujimoto J, Yang Y, Wang T, Wang B, Poteete A, Nilsson MB, Le X, Tina C, Jaffray D, Navin N, Byers LA, Gibbons D, Heymach J, Chen K, Cheng C, Zhang J, Wu J. CoCo-ST: Comparing and Contrasting Spatial Transcriptomics data sets using graph contrastive learning. Res Sq, 2024. e-Pub 2024. PMID: 38826463.
2. Aminu M, Hong L, Vokes N, Schmidt ST, Saad M, Zhu B, Le X, Tina C, Sheshadri A, Wang B, Jaffray D, Futreal A, Lee JJ, Byers LA, Gibbons D, Heymach J, Chen K, Cheng C, Zhang J, Wu J. Joint multi-omics discriminant analysis with consistent representation learning using PANDA. Res Sq, 2024. e-Pub 2024. PMID: 38798352.
3. Sujit SJ, Aminu M, Karpinets TV, Chen P, Saad MB, Salehjahromi M, Boom JD, Qayati M, George JM, Allen H, Antonoff MB, Hong L, Hu X, Heeke S, Tran HT, Le X, Elamin YY, Altan M, Vokes NI, Sheshadri A, Lin J, Zhang J, Lu Y, Behrens C, Godoy MCB, Wu CC, Chang JY, Chung C, Jaffray DA, Wistuba II, Lee JJ, Vaporciyan AA, Gibbons DL, Heymach J, Zhang J, Cascone T, Wu J. Enhancing NSCLC recurrence prediction with PET/CT habitat imaging, ctDNA, and integrative radiogenomics-blood insights. Nat Commun 15(1):3152, 2024. e-Pub 2024. PMID: 38605064.
4. Salehjahromi M, Karpinets TV, Sujit SJ, Qayati M, Chen P, Aminu M, Saad MB, Bandyopadhyay R, Hong L, Sheshadri A, Lin J, Antonoff MB, Sepesi B, Ostrin EJ, Toumazis I, Huang P, Cheng C, Cascone T, Vokes NI, Behrens C, Siewerdsen JH, Hazle JD, Chang JY, Zhang J, Lu Y, Godoy MCB, Chung C, Jaffray D, Wistuba I, Lee JJ, Vaporciyan AA, Gibbons DL, Gladish G, Heymach JV, Wu CC, Zhang J, Wu J. Synthetic PET from CT improves diagnosis and prognosis for lung cancer: Proof of concept. Cell Rep Med 5(3):101463, 2024. e-Pub 2024. PMID: 38471502.
5. Tran HT, Heeke S, Sujit S, Vokes N, Zhang J, Aminu M, Lam VK, Vaporciyan A, Swisher SG, Godoy MCB, Cascone T, Sepesi B, Gibbons DL, Wu J, Heymach JV. Circulating tumor DNA and radiological tumor volume identify patients at risk for relapse with resected, early-stage non-small-cell lung cancer. Ann Oncol 35(2):183-189, 2024. e-Pub 2024. PMID: 37992871.
6. Chen P, Rojas FR, Hu X, Serrano A, Zhu B, Chen H, Hong L, Bandyoyadhyay R, Aminu M, Kalhor N, Lee JJ, El Hussein S, Khoury JD, Pass HI, Moreira AL, Velcheti V, Sterman DH, Fukuoka J, Tabata K, Su D, Ying L, Gibbons DL, Heymach JV, Wistuba II, Fujimoto J, Solis Soto LM, Zhang J, Wu J. Pathomic Features Reveal Immune and Molecular Evolution From Lung Preneoplasia to Invasive Adenocarcinoma. Mod Pathol 36(12):100326, 2023. e-Pub 2023. PMID: 37678674.
7. Diao S, Chen P, Showkatian E, Bandyopadhyay R, Rojas FR, Zhu B, Hong L, Aminu M, Saad MB, Salehjahromi M, Muneer A, Sujit SJ, Behrens C, Gibbons DL, Heymach JV, Kalhor N, Wistuba II, Solis Soto LM, Zhang J, Qin W, Wu J. Automated Cellular-Level Dual Global Fusion of Whole-Slide Imaging for Lung Adenocarcinoma Prognosis. Cancers (Basel) 15(19), 2023. e-Pub 2023. PMID: 37835518.
8. Saad MB, Hong L, Aminu M, Vokes NI, Chen P, Salehjahromi M, Qin K, Sujit SJ, Lu X, Young E, Al-Tashi Q, Qureshi R, Wu CC, Carter BW, Lin SH, Lee PP, Gandhi S, Chang JY, Li R, Gensheimer MF, Wakelee HA, Neal JW, Lee HS, Cheng C, Velcheti V, Lou Y, Petranovic M, Rinsurongkawong W, Le X, Rinsurongkawong V, Spelman A, Elamin YY, Negrao MV, Skoulidis F, Gay CM, Cascone T, Antonoff MB, Sepesi B, Lewis J, Wistuba II, Hazle JD, Chung C, Jaffray D, Gibbons DL, Vaporciyan A, Lee JJ, Heymach JV, Zhang J, Wu J. Predicting benefit from immune checkpoint inhibitors in patients with non-small-cell lung cancer by CT-based ensemble deep learning: a retrospective study. Lancet Digit Health 5(7):e404-e420, 2023. e-Pub 2023. PMID: 37268451.
9. Aminu, M, Ahmad, NA. Effective Dimensionality Reduction Using Kernel Locality Preserving Partial Least Squares Discriminant Analysis. Bulletin of the Malaysian Mathematical Sciences Society 46(3), 2023. e-Pub 2023.
10. Hong L, Aminu M, Li S, Lu X, Petranovic M, Saad MB, Chen P, Qin K, Varghese S, Rinsurongkawong W, Rinsurongkawong V, Spelman A, Elamin YY, Negrao MV, Skoulidis F, Gay CM, Cascone T, Gandhi SJ, Lin SH, Lee PP, Carter BW, Wu CC, Antonoff MB, Sepesi B, Lewis J, Gibbons DL, Vaporciyan AA, Le X, Jack Lee J, Roy-Chowdhuri S, Routbort MJ, Gainor JF, Heymach JV, Lou Y, Wu J, Zhang J, Vokes NI. Efficacy and clinicogenomic correlates of response to immune checkpoint inhibitors alone or with chemotherapy in non-small cell lung cancer. Nat Commun 14(1):695, 2023. e-Pub 2023. PMID: 36755027.
11. Aminu M, Daver N, Godoy MCB, Shroff G, Wu C, Torre-Sada LF, Goizueta A, Shannon VR, Faiz SA, Altan M, Garcia-Manero G, Kantarjian H, Ravandi-Kashani F, Kadia T, Konopleva M, DiNardo C, Pierce S, Naing A, Kim ST, Kontoyiannis DP, Khawaja F, Chung C, Wu J, Sheshadri A. Heterogenous lung inflammation CT patterns distinguish pneumonia and immune checkpoint inhibitor pneumonitis and complement blood biomarkers in acute myeloid leukemia: proof of concept. Front Immunol 14:1249511, 2023. e-Pub 2023. PMID: 37841255.
12. Aminu M, Yadav D, Hong L, Young E, Edelkamp P Jr, Saad M, Salehjahromi M, Chen P, Sujit SJ, Chen MM, Sabloff B, Gladish G, de Groot PM, Godoy MCB, Cascone T, Vokes NI, Zhang J, Brock KK, Daver N, Woodman SE, Tawbi HA, Sheshadri A, Lee JJ, Jaffray D, D Code Team, Wu CC, Chung C, Wu J. Habitat Imaging Biomarkers for Diagnosis and Prognosis in Cancer Patients Infected with COVID-19. Cancers (Basel) 15(1), 2022. e-Pub 2022. PMID: 36612278.
13. Chen P, Saad MB, Rojas FR, Salehjahromi M, Aminu M, Bandyopadhyay R, et al LH. Cellular Architecture on Whole Slide Images Allows the Prediction of Survival in Lung Adenocarcinoma. International Workshop on Computational Mathematics Modeling in Cancer Analysis, 2022. e-Pub 2022.
14. Chen P, El Hussein S, Xing F, Aminu M, Kannapiran A, Hazle JD, Medeiros LJ, Wistuba II, Jaffray D, Khoury JD, Wu J. Chronic Lymphocytic Leukemia Progression Diagnosis with Intrinsic Cellular Patterns via Unsupervised Clustering. Cancers (Basel) 14(10), 2022. e-Pub 2022. PMID: 35626003.
15. Aminu, M, Ahmad, NA. Locality preserving partial least squares discriminant analysis for face recognition. Journal of King Saud University - Computer and Information Sciences 34(2):153-164, 2022. e-Pub 2022.
16. Chen P, Aminu M, Hussein SE, Khoury JD, Wu J. CellSpatialGraph: Integrate hierarchical phenotyping and graph modeling to characterize spatial architecture in tumor microenvironment on digital pathology. Softw Impacts 10, 2021. e-Pub 2021. PMID: 36203948.
17. Aminu M, Ahmad NA, Noor MHM. Covid-19 detection via deep neural network and occlusion sensitivity maps. Alexandria Engineering Journal Volume 60(Issue 5):4829-4855, 2021. e-Pub 2021.
18. Chen P, Aminu M, Hussein SE, Khoury JD, Wu AJ. Hierarchical phenotyping and graph modeling of spatial architecture in lymphoid neoplasms. Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th International Conference, 2021. e-Pub 2021.
19. Aminu M, Ahmad NA. Complex Chemical Data Classification and Discrimination Using Locality Preserving Partial Least Squares Discriminant Analysis. ACS Omega 5(41):26601-26610, 2020. e-Pub 2020. PMID: 33110988.
20. Aminu M, Ahmad NA. New Variants of Global-Local Partial Least Squares Discriminant Analysis for Appearance-Based Face Recognition. IEEE Access Volume 8:166703 - 166720, 2020. e-Pub 2020.
21. Aminu M, Ahmad NA. Uncorrelated Discriminant Projection Based on Maximum Margin Criterion and Its Kernelized Extension. The 2nd Joint International Conference on Emerging Computing Technology and Sports (JICETS) 2019 1529(1529(4):052070), 2020. e-Pub 2020.
22. Aminu M, Ahmad NA, Awang N. Feature extraction and classification for spoken letter recognition using locality preserving partial least squares discriminant analysis. International Conference On Mathematical Sciences And Technology 2018 (Mathtech2018): Innovative Technologies for Mathematics & Mathematics for Technological Innovation Volume 2184(Issue 1), 2019. e-Pub 2019.
23. Aminu M, Ahmad NA, Awang N. Feature Extraction Using Discriminant Graph Laplacian Principal Component Analysis with Application to Biomedical Datasets. International Conference on Biomedical Engineering Volume, 2019. e-Pub 2019.
24. Aminu M, Ahmad NA, Awang N. A modified locality preserving partial least squares for classification problems. International Conference On Mathematics, Engineering And Industrial Applications 2018 (ICoMEIA 2018) Volume 2013(Issue 1), 2018. e-Pub 2018.
25. Aminu A, Aminu M, Ringim MZ. Permanent of a rhotrix. Afrika Matematika Volume 28:481–491, 2016. e-Pub 2016.

Abstracts

1. Zhu, Li J, Chen H, Chen P, Fujimoto J, Tian Y, Aminu M, et al. Single Cell and Spatial Profiling Reveal Molecular and Immune Evolution from Precancers to Invasive Lung Adenocarcinomas in Genetic and Carcinogen-Induced Mouse Models. American Association for Cancer Research annual meeting Volume 83(Issue 7), 2023. e-Pub 2023.
2. Aminu M, Vokes, Saad, Li, Hong, Mohamed, Boom. Tumor Volumetric Analysis to Correlate Disease Burden with Response to Dual Immune Checkpoint Blockade in Metastatic NSCLC. American Association for Cancer Research annual meeting 83(7):4393-93, 2023. e-Pub 2023.
3. Chen,P, Rojas F, Hu X, Fujimoto J, Serrano A, Zhu B, Hong L, Bandyopadhyay R, Aminu M, et al.. Pathomics Reveals the Molecular and Immune Evolution from Lung Preneoplasia to Invasive Adenocarcinoma. American Association for Cancer Research annual meeting, 2023. e-Pub 2023.
4. Hong, Aminu M, Lu X, Saad MB, Chen P, Rinsurongkawong W, Spelman A, et al. Genomic and Clinical Predictors of Early Disease Progression and Chemoimmunotherapy Benefit in Advanced NSCLC. American Association for Cancer Research annual meeting 83(7_Supplement):5443-43, 2023. e-Pub 2023.
5. Hong, Rinsurongkawong W, Saad MB, Chen P, Aminu M, Spelman AR, Negrao MV, Cascone, Lin, Lee, Sepesi, Lewis, Gibbons, Vaporciyan, Lee, Le, Wu, Heymach, Zhang, Vokes. Real-World Effectiveness of Immune Checkpoint Inhibitors Alone or in Combination with Chemotherapy in Metastatic Non–Small Cell Lung Cancer. 2022 American Society of Clinical Oncology Annual Meeting I 40(16):9055-9055, 2022. e-Pub 2022.
6. Saad, Hong L, Aminu M, Vokes NI, Chen P, Wu CC, Rinsurongkawong W, Spelman, Negrao, Cascone, Lin, Lee, Sepesi, Gibbons, Vaporciyan, Lee, Le, Zhang, Wu, Heymach. Deep Learning Signature from Chest Ct and Association with Immunotherapy Outcomes in EGFR/Alk-Negative NSCLC.". 2022 American Society of Clinical Oncology Annual Meeting I 40(16), 2022. e-Pub 2022.